Publications - Thomas Kiørboe's personal website

A siliceous arms race in pelagic plankton

Ryderheim, Fredrik ; Olesen, Jørgen ; Kiørboe, Thomas
in: Proceedings of the National Academy of Sciences of the United States of America, vol: 121, issue: 35

Type: Journal article (Peer reviewed)

Status: Published | Year: 2024 | DOI: https://doi.org/10.1073/pnas.2407876121

Foraging mechanisms in excavate flagellates shed light on the functional ecology of early eukaryotes

Suzuki-Tellier, Sei ; Miano, Federica ; Asadzadeh, Seyed Saeed ; Simpson, Alastair G. B. ; Kiørboe, Thomas
in: Proceedings of the National Academy of Sciences of the United States of America, vol: 121, issue: 22

Type: Journal article (Peer reviewed)

Status: Published | Year: 2024 | DOI: https://doi.org/10.1073/pnas.2317264121

High-speed escape jumps in haptophytes: Mechanism and triggering fluid signal

Miano, Federica ; Asadzadeh, Seyed Saeed ; Ryderheim, Fredrik ; Andersen, Anders ; Kiørboe, Thomas
in: Limnology and Oceanography, vol: 69, issue: 12, pages: 2846-2858

Type: Journal article (Peer reviewed)

Status: Published | Year: 2024 | DOI: https://doi.org/10.1002/lno.12713

Intraspecific genetic diversity and coexistence in phytoplankton populations

Ryderheim, Fredrik ; Kiørboe, Thomas
in: Limnology and Oceanography, vol: 69, issue: 6, pages: 1450-1463

Type: Journal article (Peer reviewed)

Status: Published | Year: 2024 | DOI: https://doi.org/10.1002/lno.12587

Microzooplankton grazers induce chain length plasticity in colonial diatoms

Ryderheim, Fredrik ; Huang, Yuan ; Selander, Erik ; Kiørboe, Thomas
in: Limnology and Oceanography, vol: 69, issue: 5, pages: 1260-1269

Type: Journal article (Peer reviewed)

Status: Published | Year: 2024 | DOI: https://doi.org/10.1002/lno.12569

Organismal trade-offs and the pace of planktonic life

Kiørboe, Thomas
in: Biological Reviews, vol: 99, issue: 6, pages: 1992-2002

Type: Journal article (Peer reviewed)

Status: Published | Year: 2024 | DOI: https://doi.org/10.1111/brv.13108

Predator-induced defense decreases growth rate and photoprotective capacity in a nitrogen-limited dinoflagellate, Alexandrium minutum

Zhang, Jingjing ; Ryderheim, Fredrik ; Selander, Erik ; Wünsch, Urban ; Kiørboe, Thomas
in: Harmful Algae, vol: 139

Type: Journal article (Peer reviewed)

Status: Published | Year: 2024 | DOI: https://doi.org/10.1016/j.hal.2024.102734

Revisiting the burglar alarm hypothesis: A behavioural cascade mediated by dinoflagellate bioluminescence

Huang, Yuan ; Ryderheim, Fredrik ; Kiørboe, Thomas
in: Functional Ecology, vol: 38, issue: 2, pages: 306-314

Type: Journal article (Peer reviewed)

Status: Published | Year: 2024 | DOI: https://doi.org/10.1111/1365-2435.14488

The fluid dynamics of barnacle feeding

Maar, Kristian ; Shavit, Uri ; Andersen, Anders ; Kiørboe, Thomas
in: Journal of Experimental Biology, vol: 227, issue: 5

Type: Journal article (Peer reviewed)

Status: Published | Year: 2024 | DOI: https://doi.org/10.1242/jeb.246541

The function of the feeding groove of 'typical excavate' flagellates

Suzuki-Tellier, Sei ; Kiørboe, Thomas ; Simpson, Alastair G. B.
in: Journal of Eukaryotic Microbiology, vol: 71, issue: 2

Type: Journal article (Peer reviewed)

Status: Published | Year: 2024 | DOI: https://doi.org/10.1111/jeu.13016

Thrust dynamics of hairy flagella with three-dimensional wave pattern

Walther, Jens Honore ; Asadzadeh, Seyed S. ; Kiørboe, Thomas
Presented at: 77th Annual Meeting of the Division of Fluid Dynamics

Type: Conference abstract for conference (Peer reviewed)

Status: Published | Year: 2024

Conflicting Roles of Flagella in Planktonic Protists: Propulsion, Resource Acquisition, and Stealth

Asadzadeh, S. S. ; Walther, J. H. ; Kiørboe, Thomas
in: PRX Life, vol: 1, issue: 1

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1103/PRXLife.1.013002

Gelatinous larvacean zooplankton can enhance trophic transfer and carbon sequestration

Jaspers, Cornelia ; Hopcroft, R.R. ; Kiørboe, T. ; Lombard, F. ; López-Urrutia, A. ; Everett, J.D. ; Richardson, A.J.
in: Trends in Ecology and Evolution, vol: 38, issue: 10, pages: 980-993

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1016/j.tree.2023.05.005

Model estimates of metazoans' contributions to the biological carbon pump

Pinti, Jérôme ; Devries, Tim ; Norin, Tommy ; Serra-Pompei, Camila ; Proud, Roland ; Siegel, David A. ; Kiørboe, Thomas ; Petrik, Colleen M. ; Andersen, Ken H. ; Brierley, Andrew S. ; Visser, André W.
in: Biogeosciences, vol: 20, issue: 5, pages: 997-1009

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.5194/bg-20-997-2023

Predation in a Microbial World: Mechanisms and Trade-Offs of Flagellate Foraging

Kiørboe, Thomas
in: Annual Review of Marine Science, vol: 16

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1146/annurev-marine-020123-102001

Short handling times allow for active prey selection in suspension feeding copepods

Ryderheim, Fredrik ; Thygesen, Uffe H. ; Kiørboe, Thomas
in: Limnology and Oceanography, vol: 68, issue: 4, pages: 891-901

Type: Journal article (Peer reviewed)

Status: Published | Year: 2023 | DOI: https://doi.org/10.1002/lno.12317

Trade-offs in flagella propulsion, feeding and stealth*

Walther, Jens H. ; Asadzadeh, Seyed Saeed ; Kiørboe, Thomas
part of: Bulletin of the American Physical Society , pages: 1, 2023
Presented at: 76th Annual Meeting of the Division of Fluid Dynamics

Type: Conference abstract in proceedings (Peer reviewed)

Status: Published | Year: 2023

Acoustic tethering of microorganisms

Rode, M. ; Bioue, A. ; Miano, F. ; Bruus, H. ; Kiørboe, T. ; Andersen, A.
in: Journal of Experimental Biology, vol: 225, issue: 20

Type: Journal article (Peer reviewed)

Status: Published | Year: 2022 | DOI: https://doi.org/10.1242/jeb.244089

Costs and benefits of predator-induced defence in a toxic diatom

Olesen, Anna J. ; Ryderheim, Fredrik ; Krock, Bernd ; Lundholm, Nina ; Kiørboe, Thomas
in: Proceedings of the Royal Society B: Biological Sciences, vol: 289

Type: Journal article (Peer reviewed)

Status: Published | Year: 2022 | DOI: https://doi.org/10.1098/rspb.2021.2735

Evolution of toxins as a public good in phytoplankton

Ehrlich, Elias ; Thygesen, Uffe Høgsbro ; Kiørboe, Thomas
in: Proceedings of the Royal Society B: Biological Sciences, vol: 289, issue: 1977

Type: Journal article (Peer reviewed)

Status: Published | Year: 2022 | DOI: https://doi.org/10.1098/rspb.2022.0393

Fear and loathing in the pelagic: How the seascape of fear impacts the biological carbon pump

Pinti, Jérôme ; Visser, André W. ; Serra‐Pompei, Camila ; Andersen, Ken H. ; Ohman, Mark D. ; Kiørboe, Thomas
in: Limnology and Oceanography, vol: 67, issue: 6, pages: 1238-1256

Type: Review (Peer reviewed)

Status: Published | Year: 2022 | DOI: https://doi.org/10.1002/lno.12073

Feeding flow and membranelle filtration in ciliates

Rode, Mads ; Kiørboe, Thomas ; Andersen, Anders
in: Physical Review Fluids, vol: 7, issue: 2

Type: Journal article (Peer reviewed)

Status: Published | Year: 2022 | DOI: https://doi.org/10.1103/PhysRevFluids.7.023102

Grazer-induced aggregation in diatoms

Grønning, Josephine ; Kiørboe, Thomas
in: Limnology And Oceanography Letters, vol: 7, issue: 6, pages: 492-500

Type: Letter (Peer reviewed)

Status: Published | Year: 2022 | DOI: https://doi.org/10.1002/lol2.10282

Hydrodynamic interactions are key in thrust-generation of hairy flagella

Asadzadeh, S. S. ; Walther, J. H. ; Andersen, A. ; Kiørboe, T.
in: Physical Review Fluids, vol: 7, issue: 7

Type: Journal article (Peer reviewed)

Status: Published | Year: 2022 | DOI: https://doi.org/10.1103/PhysRevFluids.7.073101

Hydrodynamic trade-offs in different flagellar arrangement

Asadzadeh, Seyed Saeed ; Walther, Jens H. ; Kiørboe, Thomas
Presented at: Microscale Ocean Biophysics 6.0

Type: Conference abstract for conference (Peer reviewed)

Status: Published | Year: 2022

Linking plankton size spectra and community composition to carbon export and its efficiency

Serra‐Pompei, Camila ; Ward, Ben A. ; Pinti, Jérôme ; Visser, André W. ; Kiørboe, Thomas ; Andersen, Ken H.
in: Global Biogeochemical Cycles, vol: 36, issue: 5

Type: Journal article (Peer reviewed)

Status: Published | Year: 2022 | DOI: https://doi.org/10.1029/2021GB007275

Machine learning techniques to characterize functional traits of plankton from image data

Orenstein, Eric C. ; Ayata, Sakina‐Dorothée ; Maps, Frédéric ; Becker, Érica C. ; Benedetti, Fabio ; Biard, Tristan ; de Garidel‐Thoron, Thibault ; Ellen, Jeffrey S. ; Ferrario, Filippo ; Giering, Sarah L. C. ; Guy‐Haim, Tamar ; Hoebeke, Laura ; Iversen, Morten Hvitfeldt ; Kiørboe, Thomas ; Lalonde, Jean‐François ; Lana, Arancha ; Laviale, Martin ; Lombard, Fabien ; Lorimer, Tom ; Martini, Séverine ; Meyer, Albin ; Möller, Klas Ove ; Niehoff, Barbara ; Ohman, Mark D. ; Pradalier, Cédric ; Romagnan, Jean‐Baptiste ; Schröder, Simon‐Martin ; Sonnet, Virginie ; Sosik, Heidi M. ; Stemmann, Lars S. ; Stock, Michiel ; Terbiyik‐Kurt, Tuba ; Valcárcel‐Pérez, Nerea ; Vilgrain, Laure ; Wacquet, Guillaume ; Waite, Anya M. ; Irisson, Jean‐Olivier
in: Limnology and Oceanography, vol: 67, issue: 8, pages: 1647-1669

Type: Journal article (Peer reviewed)

Status: Published | Year: 2022 | DOI: https://doi.org/10.1002/lno.12101

Mechanisms and fluid dynamics of foraging in heterotrophic nanoflagellates

Suzuki‐Tellier, Sei ; Andersen, Anders ; Kiørboe, Thomas
in: Limnology and Oceanography, vol: 67, issue: 6, pages: 1287-1298

Type: Journal article (Peer reviewed)

Status: Published | Year: 2022 | DOI: https://doi.org/10.1002/lno.12077

Models of flow through sponges must consider the sponge tissue

Leys, Sally P. ; Matveev, Eugueni ; Suarez, Pablo Aragonés ; Kahn, Amanda S. ; Asadzadeh, Seyed Saeed ; Kiørboe, Thomas ; Larsen, Poul S. ; Walther, Jens H. ; Yahel, Gitai
in: Nature, vol: 603, issue: 7902, pages: E23-E25

Type: Journal article

Status: Published | Year: 2022 | DOI: https://doi.org/10.1038/s41586-021-04380-8

Predator Field and Colony Morphology Determine the Defensive Benefit of Colony Formation in Marine Phytoplankton

Ryderheim, Fredrik ; Juel Hansen, Per ; Kiørboe, Thomas
in: Frontiers in Marine Science, vol: 8

Type: Journal article (Peer reviewed)

Status: Published | Year: 2022 | DOI: https://doi.org/10.3389/fmars.2022.829419

Resolving the paradox of the ambush feeding cyclopoid copepod Apocyclops royi being microphageous

Zempléni, Abel ; Hansen, Benni Winding ; Kiørboe, Thomas ; Ryderheim, Fredrik
in: Journal of Plankton Research, vol: 44, issue: 6, pages: 936-941

Type: Journal article (Peer reviewed)

Status: Published | Year: 2022 | DOI: https://doi.org/10.1093/plankt/fbac040

Thicker shells reduce copepod grazing on diatoms

Ryderheim, Fredrik ; Grønning, Josephine ; Kiørboe, Thomas
in: Limnology And Oceanography Letters, vol: 7, issue: 5, pages: 435-442

Type: Letter (Peer reviewed)

Status: Published | Year: 2022 | DOI: https://doi.org/10.1002/lol2.10243

Foraging trade-offs, flagellar arrangements, and flow architecture of planktonic protists

Nielsen, Lasse Tor ; Kiørboe, Thomas
in: Proceedings of the National Academy of Sciences of the United States of America, vol: 118, issue: 3

Type: Journal article (Peer reviewed)

Status: Published | Year: 2021 | DOI: https://doi.org/10.1073/pnas.2009930118

Predator-induced defence in a dinoflagellate generates benefits without direct costs

Ryderheim, Fredrik ; Selander, Erik ; Kiørboe, Thomas
in: ISME Journal, pages: 2107-2116

Type: Journal article (Peer reviewed)

Status: Published | Year: 2021 | DOI: https://doi.org/10.1038/s41396-021-00908-y

Reply to Letten and Yamamichi: A rescue at the cost of falsifiability

Kiørboe, Thomas ; Thomas, Mridul K.
in: Proceedings of the National Academy of Sciences of the United States of America, vol: 118, issue: 5

Type: Letter (Peer reviewed)

Status: Published | Year: 2021 | DOI: https://doi.org/10.1073/pnas.2025720118

The effect of external flow on the feeding currents of sessile microorganisms

Pepper, Rachel E. ; Riley, Emily E. ; Baron, Matthieu ; Hurot, Thomas ; Nielsen, Lasse Tor ; Koehl, M. A. R. ; Kiørboe, Thomas ; Andersen, Anders
in: Journal of the Royal Society. Interface, vol: 18, issue: 175

Type: Journal article (Peer reviewed)

Status: Published | Year: 2021 | DOI: https://doi.org/10.1098/rsif.2020.0953

A general size- and trait-based model of plankton communities

Serra-Pompei, Camila ; Soudijn, Floor ; Visser, André W. ; Kiørboe, Thomas ; Andersen, Ken Haste
in: Progress in Oceanography, vol: 189

Type: Journal article (Peer reviewed)

Status: Published | Year: 2020 | DOI: https://doi.org/10.1016/j.pocean.2020.102473

Decreasing phytoplankton size adversely affects ocean food chains

Brander, Keith ; Kiørboe, Thomas
in: Global Change Biology, vol: 26, issue: 10, pages: 5356-5357

Type: Journal article

Status: Published | Year: 2020 | DOI: https://doi.org/10.1111/gcb.15216

Diatom defence: Grazer induction and cost of shell‐thickening

Grønning, Josephine ; Kiørboe, Thomas
in: Functional Ecology, vol: 34, issue: 9, pages: 1790-1801

Type: Journal article (Peer reviewed)

Status: Published | Year: 2020 | DOI: https://doi.org/10.1111/1365-2435.13635

Dual-band fluorosensor for discriminating non-eating from algae-eating zooplankton in aquatic environments

Nielsen, J. H. ; Pedersen, C. ; Kiørboe, Thomas ; Nikolajsen, Thomas ; Brydegaard, M. ; Rodrigo, Peter John
in: OSA Continuum, vol: 3, issue: 7, pages: 1730-1738

Type: Journal article (Peer reviewed)

Status: Published | Year: 2020 | DOI: https://doi.org/10.1364/OSAC.389089

Et vandigt våbenkapløb

Kiørboe, Thomas ; Grønning, Josephine
in: Aktuel Naturvidenskab, vol: 5, pages: 20-22

Type: Journal article (Peer reviewed)

Status: Published | Year: 2020

Feasibility study of the use of autofluorescence for distinguishing sea lice, lepeophtheirus salmonis.

Nielsen, Josefine Holm ; Pedersen, Christian ; Kiørboe, Thomas ; Nikolajsen, Thomas ; Brydegaard, Mikkel ; Rodrigo, Peter John
Presented at: 2nd International Scientific Conference in Aquatic Animal Epidemiology

Type: Conference abstract for conference (Peer reviewed)

Status: Published | Year: 2020

Havets økologi på formel

Kiørboe, Thomas
in: Carlsbergfondet. Aarsskrift, vol: 2020, pages: 16-19

Type: Journal article

Status: Published | Year: 2020

Heterotrophic eukaryotes show a slow-fast continuum, not a gleaner-exploiter trade-off

Kiørboe, Thomas ; Thomas, Mridul K.
in: Proceedings of the National Academy of Sciences of the United States of America, vol: 117, issue: 40

Type: Journal article (Peer reviewed)

Status: Published | Year: 2020 | DOI: https://doi.org/10.1073/pnas.2008370117

Hydrodynamics of sponge pumps and evolution of the sponge body plan

Asadzadeh, Seyed Saeed ; Kiørboe, Thomas ; Larsen, Poul S. ; P. Leys, Sally ; Yahel, Gitai ; Walther, Jens H.
in: eLife

Type: Journal article (Peer reviewed)

Status: Published | Year: 2020 | DOI: https://doi.org/10.7554/eLife.61012

Hydrodynamics Shed Light on Dinoflagellate Evolution

Schuech, R. ; Nielsen, T. L. ; Humphries, S. ; Smith, D. ; Kiorboe, T.
in: Integrative and Comparative Biology, vol: 60, pages: E207-E207

Type: Conference abstract in journal (Peer reviewed)

Status: Published | Year: 2020

Kinematic and Dynamic Scaling of Copepod Swimming

Svetlichny, Leonid ; Larsen, Poul S. ; Kiørboe, Thomas
in: Fluids, vol: 5, issue: 2

Type: Review (Peer reviewed)

Status: Published | Year: 2020 | DOI: https://doi.org/10.3390/fluids5020068

Seasonal strategies in the world’s oceans

Visser, André W. ; Brun, Philipp ; Chakraborty, Subhendu ; Dencker, Tim Spaanheden ; Daniël van Denderen, P. ; van Gemert, Rob ; van Someren Gréve, Hans ; Heilmann, Irene ; Holm, Mark Wejlemann ; Huld Jónasdóttir, Sigrún ; Kenitz, Kasia M. ; Kiørboe, Thomas ; Lindegren, Martin ; Mariani, Patrizio ; Nielsen, Lasse Tor ; Pancic, Marina ; Payne, Mark ; Pécuchet, Lauréne ; Schnedler-Meyer, Nicolas Azaña ; Thygesen, Uffe Høgsbro ; Törnroos, Anna ; Andersen, Ken Haste
in: Progress in Oceanography, vol: 189

Type: Journal article (Peer reviewed)

Status: Published | Year: 2020 | DOI: https://doi.org/10.1016/j.pocean.2020.102466

The 2020 motile active matter roadmap

Gompper, Gerhard ; Winkler, Roland G ; Speck, Thomas ; Solon, Alexandre ; Nardini, Cesare ; Peruani, Fernando ; Löwen, Hartmut ; Golestanian, Ramin ; Kaupp, U Benjamin ; Alvarez, Luis ; Kiørboe, Thomas ; Lauga, Eric ; Poon, Wilson C K ; DeSimone, Antonio ; Muiños-Landin, Santiago ; Fischer, Alexander ; Söker, Nicola A ; Cichos, Frank ; Kapral, Raymond ; Gaspard, Pierre ; Ripoll, Marisol ; Sagues, Francesc ; Doostmohammadi, Amin ; Yeomans, Julia M ; Aranson, Igor S ; Bechinger, Clemens ; Stark, Holger ; Hemelrijk, Charlotte K ; Nedelec, François J ; Sarkar, Trinish ; Aryaksama, Thibault ; Lacroix, Mathilde ; Duclos, Guillaume ; Yashunsky, Victor ; Silberzan, Pascal ; Arroyo, Marino ; Kale, Sohan
in: Journal of Physics Condensed Matter, vol: 32, issue: 19

Type: Journal article (Peer reviewed)

Status: Published | Year: 2020 | DOI: https://doi.org/10.1088/1361-648x/ab6348

The effect of tethering on the clearance rate of suspension-feeding plankton

Andersen, Anders ; Kiørboe, Thomas
in: Proceedings of the National Academy of Sciences, vol: 117, issue: 48, pages: 30101-30103

Type: Journal article (Peer reviewed)

Status: Published | Year: 2020 | DOI: https://doi.org/10.1073/pnas.2017441117